test_NCBIStandalone
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************************************************** TESTING bt001
************************************************** TESTING bt002
************************************************** TESTING bt003
************************************************** TESTING bt004
************************************************** TESTING bt005
************************************************** TESTING bt006
************************************************** TESTING bt007
************************************************** TESTING bt009
************************************************** TESTING bt010
************************************************** TESTING bt011
************************************************** TESTING bt012
************************************************** TESTING bt013
************************************************** TESTING bt014
************************************************** TESTING bt015
************************************************** TESTING bt016
************************************************** TESTING bt017
************************************************** TESTING bt018
************************************************** TESTING bt039
************************************************** TESTING bt040
************************************************** TESTING bt041
************************************************** TESTING bt042
************************************************** TESTING bt043
************************************************** TESTING bt044
************************************************** TESTING bt045
************************************************** TESTING bt046
************************************************** TESTING bt047
************************************************** TESTING bt048
************************************************** TESTING bt049
************************************************** TESTING bt050
************************************************** TESTING bt051
************************************************** TESTING bt052
************************************************** TESTING bt053
************************************************** TESTING bt054
************************************************** TESTING bt055
************************************************** TESTING bt056
************************************************** TESTING bt057
************************************************** TESTING bt058
************************************************** TESTING bt059
************************************************** TESTING bt060
************************************************** TESTING bt062
************************************************** TESTING bt063
************************************************** TESTING bt067
************************************************** TESTING bt071
************************************************** TESTING bt001
*************** start_header
version        : BLASTP 2.0.10 [Aug-26-1999]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|120291|sp|P21297|FLBT_CAUCR FLBT PROTEIN
query_info     :          (141 letters)
noevent        : 
database_info  : Database: data/swissprot
database_info  :            82,258 sequences; 29,652,561 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
noevent        : 
description_hea: 
description_hea: Sequences producing significant alignments:
noevent        : 
description    : gi|120291|sp|P21297|FLBT_CAUCR FLBT PROTEIN
description    : gi|3024946|sp|Q58368|Y958_METJA HYPOTHETICAL PROTEIN MJ0958 PRE
description    : gi|3024745|sp|O26320|THSA_METTH PROBABLE THERMOSOME SUBUNIT A
noevent        : 
*************** end_descriptions
*************** start_alignment
title          : >gi|120291|sp|P21297|FLBT_CAUCR FLBT PROTEIN
length         :            Length = 141
noevent        : 
*************** start_hsp
score          :  Score =  284 bits (718), Expect = 7e-77
identities     :  Identities = 141/141 (100%), Positives = 141/141 (100%)
noevent        : 
query          : Query: 1   MPLKLSLKPGEKFVLNGAVVQNGDRRGVLVLQNKASVLREKDIMQPDQVTTP
align          :            MPLKLSLKPGEKFVLNGAVVQNGDRRGVLVLQNKASVLREKDIMQPDQVTTP
sbjct          : Sbjct: 1   MPLKLSLKPGEKFVLNGAVVQNGDRRGVLVLQNKASVLREKDIMQPDQVTTP
noevent        : 
query          : Query: 61  MMMYLDEVGAEKFYEEFATRLNEFMGVVRNPVVLQDCIAISKHVMAREYYKA
align          :            MMMYLDEVGAEKFYEEFATRLNEFMGVVRNPVVLQDCIAISKHVMAREYYKA
sbjct          : Sbjct: 61  MMMYLDEVGAEKFYEEFATRLNEFMGVVRNPVVLQDCIAISKHVMAREYYKA
noevent        : 
query          : Query: 121 EYEDERLGHVSSGVSAGGDAG 141
align          :            EYEDERLGHVSSGVSAGGDAG
sbjct          : Sbjct: 121 EYEDERLGHVSSGVSAGGDAG 141
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|3024946|sp|Q58368|Y958_METJA HYPOTHETICAL PROTEIN MJ0958
title          :            PRECURSOR
length         :            Length = 426
noevent        : 
*************** start_hsp
score          :  Score = 29.3 bits (64), Expect = 3.4
identities     :  Identities = 15/47 (31%), Positives = 23/47 (48%)
noevent        : 
query          : Query: 28  VLVLQNKASVLREKDIMQPDQVTTPARHIYFPVMMMYLDEVGAEKFY 74
align          :            +LVL N  ++   K     D  TT   +IY P+ +    +  A+KFY
sbjct          : Sbjct: 169 ILVLINNTNITELKKFEDDDYYTTFQHYIYQPIFIFTTYDSKAKKFY 215
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|3024745|sp|O26320|THSA_METTH PROBABLE THERMOSOME SUBUNIT A
length         :            Length = 542
noevent        : 
*************** start_hsp
score          :  Score = 29.0 bits (63), Expect = 4.5
identities     :  Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/
noevent        : 
query          : Query: 34  KASVLREKDIMQPDQVTTPARHIYFPVMMMYLDEVGAEKFYEEFATRLNEFM
align          :            +A V+ EK I   D+V T       P  +  +     +   EE    L + +
sbjct          : Sbjct: 339 EAGVIYEKKIF--DEVLTFIEECRDPKAISIILRGSTKHVAEEMERALEDAI
noevent        : 
query          : Query: 94  LQDCIAISKHVMAREYYKALMLSRKLIEYEDERLGHVSSGVSAGGDA 140
align          :            L+D     + V+A      + ++RKL EY D   G     VSA  DA
sbjct          : Sbjct: 395 LED-----REVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADA 436
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_database_report
database       :   Database: data/swissprot
posted_date    :     Posted date:  Nov 15, 1999  2:55 PM
num_letters_in_:   Number of letters in database: 29,652,561
num_sequences_i:   Number of sequences in database:  82,258
noevent        : 
noevent        : Lambda     K      H
ka_params      :    0.321    0.138    0.390
noevent        : 
noevent        : Lambda     K      H
ka_params_gap  :    0.270   0.0470    0.230
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: BLOSUM62
gap_penalties  : Gap Penalties: Existence: 11, Extension: 1
num_hits       : Number of Hits to DB: 7927717
num_sequences  : Number of Sequences: 82258
num_extends    : Number of extensions: 284596
num_good_extend: Number of successful extensions: 567
num_seqs_better: Number of sequences better than 10.0: 3
hsps_no_gap    : Number of HSP's better than 10.0 without gapping: 2
hsps_prelim_gap: Number of HSP's successfully gapped in prelim test: 1
hsps_prelim_gap: Number of HSP's that attempted gapping in prelim test: 565
hsps_gapped    : Number of HSP's gapped (non-prelim): 3
query_length   : length of query: 141
database_length: length of database: 29,652,561
effective_hsp_l: effective HSP length: 50
effective_query: effective length of query: 91
effective_datab: effective length of database: 25,539,661
effective_searc: effective search space: 2324109151
effective_searc: effective search space used: 2324109151
threshold      : T: 11
window_size    : A: 40
dropoff_1st_pas: X1: 16 ( 7.4 bits)
gap_x_dropoff  : X2: 38 (14.8 bits)
gap_x_dropoff_f: X3: 64 (24.9 bits)
gap_trigger    : S1: 41 (21.8 bits)
blast_cutoff   : S2: 61 (28.2 bits)
*************** end_parameters
************************************************** TESTING bt003
*************** start_header
version        : BLASTP 2.0.10 [Aug-26-1999]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|1718062|sp|P16153|UTXA_CLODI UTXA PROTEIN
query_info     :          (166 letters)
noevent        : 
database_info  : Database: data/swissprot
database_info  :            82,258 sequences; 29,652,561 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
noevent        : 
*************** end_descriptions
*************** start_alignment
title          : >gi|1718062|sp|P16153|UTXA_CLODI UTXA PROTEIN
length         :            Length = 166
noevent        : 
*************** start_hsp
score          :  Score =  332 bits (843), Expect = 2e-91
identities     :  Identities = 166/166 (100%), Positives = 166/166 (100%)
noevent        : 
query          : Query: 1   MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLG
align          :            MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLG
sbjct          : Sbjct: 1   MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLG
noevent        : 
query          : Query: 61  KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHL
align          :            KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHL
sbjct          : Sbjct: 61  KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHL
noevent        : 
query          : Query: 121 LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK 166
align          :            LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK
sbjct          : Sbjct: 121 LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK 166
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|140528|sp|P24811|YQXH_BACSU HYPOTHETICAL 15.7 KD PROTEIN IN
title          :            SPOIIIC-CWLA INTERGENIC REGION (ORF2)
length         :            Length = 140
noevent        : 
*************** start_hsp
score          :  Score = 39.5 bits (90), Expect = 0.004
identities     :  Identities = 27/130 (20%), Positives = 55/130 (41%), Gaps = 19
noevent        : 
query          : Query: 37  FIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVD
align          :            ++ L+++    D L G + A K +K  S     G +RK+     +   +V+D
sbjct          : Sbjct: 26  YLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGYVRKLLNFFAVILANVID
noevent        : 
query          : Query: 97  FMLPQDCINFLRLKHLGISEFFSILF-ILYESVSILKNMCLCGLPVPKRLKE
align          :                            G+  F ++LF I  E +SI +N+   G+ +P  + +
sbjct          : Sbjct: 84  ----------------GVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITD
noevent        : 
query          : Query: 156 MTDEMNAKDE 165
align          :                 N  D+
sbjct          : Sbjct: 128 KEQSKNNADK 137
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|141088|sp|P26835|YNGD_CLOPE HYPOTHETICAL 14.9 KD PROTEIN IN
title          :            3'REGION (ORFD)
length         :            Length = 132
noevent        : 
*************** start_hsp
score          :  Score = 38.7 bits (88), Expect = 0.007
identities     :  Identities = 24/110 (21%), Positives = 52/110 (46%), Gaps = 18
noevent        : 
query          : Query: 41  VILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVD-ILT
align          :            +++ I  D L G +   KS++  S+ G+ G  +K  ++  +    ++D +L
sbjct          : Sbjct: 33  LLVFIFLDYLTGVIKGCKSKELCSNIGLRGITKKGLILVVLLVAVMLDRLLD
noevent        : 
query          : Query: 100 PQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKI 1
align          :                               +  +I+ E +SIL+N    G+P+P++LK+ +
sbjct          : Sbjct: 93  -----------------LIAYFYIMNEGISILENCAALGVPIPEKLKQAL 1
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|6014830|sp|O78935|CYB_MARAM CYTOCHROME B
length         :            Length = 379
noevent        : 
*************** start_hsp
score          :  Score = 29.3 bits (64), Expect = 4.6
identities     :  Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57
noevent        : 
query          : Query: 80  CIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSIL
align          :            C+F+L V D+LT   ++   P +   F+ +  L    +F+IL IL  ++SI+
sbjct          : Sbjct: 323 CLFWLLVADLLT-LTWIGGQPVEH-PFITIGQLASILYFAILLILMPAISII
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1351589|sp|P47694|Y456_MYCGE HYPOTHETICAL PROTEIN MG456
length         :            Length = 334
noevent        : 
*************** start_hsp
score          :  Score = 29.0 bits (63), Expect = 6.0
identities     :  Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44
noevent        : 
query          : Query: 90  LTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKN 133
align          :            LTKFN  F+ P     FLR+  +G+   FS++ I +   S  +N
sbjct          : Sbjct: 4   LTKFNKFFLTPNKLNAFLRV--IGLCGLFSVIAISFGIYSYTRN 45
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|2496246|sp|Q57881|Y439_METJA HYPOTHETICAL ATP-BINDING PROTE
title          :            MJ0439
length         :            Length = 361
noevent        : 
*************** start_hsp
score          :  Score = 28.6 bits (62), Expect = 7.8
identities     :  Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 12/5
noevent        : 
query          : Query: 106 FLRLKHLGIS---EFFSILFILYES----VSILKNMC-----LCGLPVPKRL
align          :            ++ L+ + IS   +F  +LF  YE     V I+K++      LCG+P PK
sbjct          : Sbjct: 68  YINLRGIFISKYKDFIEVLFEEYEEDRKPVEIIKSLIKDVPSLCGIPTPKNT
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_database_report
database       :   Database: data/swissprot
posted_date    :     Posted date:  Nov 15, 1999  2:55 PM
num_letters_in_:   Number of letters in database: 29,652,561
num_sequences_i:   Number of sequences in database:  82,258
noevent        : 
noevent        : Lambda     K      H
ka_params      :    0.331    0.146    0.428
noevent        : 
noevent        : Lambda     K      H
ka_params_gap  :    0.270   0.0470    0.230
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: BLOSUM62
gap_penalties  : Gap Penalties: Existence: 11, Extension: 1
num_hits       : Number of Hits to DB: 8801581
num_sequences  : Number of Sequences: 82258
num_extends    : Number of extensions: 320828
num_good_extend: Number of successful extensions: 892
num_seqs_better: Number of sequences better than 10.0: 6
hsps_no_gap    : Number of HSP's better than 10.0 without gapping: 3
hsps_prelim_gap: Number of HSP's successfully gapped in prelim test: 3
hsps_prelim_gap: Number of HSP's that attempted gapping in prelim test: 888
hsps_gapped    : Number of HSP's gapped (non-prelim): 6
query_length   : length of query: 166
database_length: length of database: 29,652,561
effective_hsp_l: effective HSP length: 46
effective_query: effective length of query: 120
effective_datab: effective length of database: 25,868,693
effective_searc: effective search space: 3104243160
effective_searc: effective search space used: 3104243160
threshold      : T: 11
window_size    : A: 40
dropoff_1st_pas: X1: 15 ( 7.2 bits)
gap_x_dropoff  : X2: 38 (14.8 bits)
gap_x_dropoff_f: X3: 64 (24.9 bits)
gap_trigger    : S1: 40 (21.9 bits)
blast_cutoff   : S2: 62 (28.6 bits)
*************** end_parameters
************************************************** TESTING bt006
*************** start_header
version        : BLASTP 2.0.10 [Aug-26-1999]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|1174726|sp|P12921|TMRB_BACSU TUNICAMYCIN RESISTANCE P
query_info     :          (197 letters)
noevent        : 
database_info  : Database: data/swissprot
database_info  :            82,258 sequences; 29,652,561 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
round          : Results from round 1
noevent        : 
noevent        : 
description_hea: 
description_hea: Sequences producing significant alignments:
noevent        : 
description    : gi|1174726|sp|P12921|TMRB_BACSU TUNICAMYCIN RESISTANCE PROTEIN
description    : gi|1352934|sp|P47169|YJ9F_YEAST HYPOTHETICAL 161.2 KD PROTEIN I
description    : gi|3915741|sp|P04407|KITH_HSV23 THYMIDINE KINASE
description    : gi|3334489|sp|P15398|RPA1_SCHPO DNA-DIRECTED RNA POLYMERASE I 1
noevent        : 
noevent        : 
converged      : CONVERGED!
*************** end_descriptions
*************** start_alignment
title          : >gi|1174726|sp|P12921|TMRB_BACSU TUNICAMYCIN RESISTANCE PROTEIN
length         :            Length = 197
noevent        : 
*************** start_hsp
score          :  Score =  402 bits (1021), Expect = e-112
identities     :  Identities = 197/197 (100%), Positives = 197/197 (100%)
noevent        : 
query          : Query: 1   MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVPQEIAKDDF
align          :            MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVPQEIAKDDF
sbjct          : Sbjct: 1   MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVPQEIAKDDF
noevent        : 
query          : Query: 61  FNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRIVHHFTLMASK
align          :            FNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRIVHHFTLMASK
sbjct          : Sbjct: 61  FNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRIVHHFTLMASK
noevent        : 
query          : Query: 121 TRAEGKNSWAAKQIDRCVEGLSSPIFEDHIQTDNLSIQDVAENIAARAELPL
align          :            TRAEGKNSWAAKQIDRCVEGLSSPIFEDHIQTDNLSIQDVAENIAARAELPL
sbjct          : Sbjct: 121 TRAEGKNSWAAKQIDRCVEGLSSPIFEDHIQTDNLSIQDVAENIAARAELPL
noevent        : 
query          : Query: 181 RRFADRLMVKLNHIRIK 197
align          :            RRFADRLMVKLNHIRIK
sbjct          : Sbjct: 181 RRFADRLMVKLNHIRIK 197
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1352934|sp|P47169|YJ9F_YEAST HYPOTHETICAL 161.2 KD PROTEIN
title          :            NMD5-HOM6 INTERGENIC REGION
length         :            Length = 1442
noevent        : 
*************** start_hsp
score          :  Score = 30.1 bits (66), Expect = 3.3
identities     :  Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 10/7
noevent        : 
query          : Query: 107 TLMASKETLLKR--------LRTRAEGKNSWAAKQIDRCVEGLSSPIFEDHI
align          :            TL+  K+  L R          TR + K S AA   D+ +EGLS P    +
sbjct          : Sbjct: 637 TLLTRKDPSLSRNLKQSAGDALTRKQEKRSKAA--FDQLLEGLSGPPLHVYY
noevent        : 
query          : Query: 159 DVAENIAARA 168
align          :            ++A+ +AARA
sbjct          : Sbjct: 695 NLAKRLAARA 704
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|3915741|sp|P04407|KITH_HSV23 THYMIDINE KINASE
length         :           Length = 376
noevent        : 
*************** start_hsp
score          :  Score = 29.0 bits (63), Expect = 7.4
identities     :  Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 2/37
noevent        : 
query          : Query: 3  IWINGAFGSGKTQTAFELHRRLNP--SYVYDPEKMGF 37
align          :           ++I+G  G GKT T+ +L   L P  + VY PE M +
sbjct          : Sbjct: 52 VYIDGPHGVGKTTTSAQLMEALGPRDNIVYVPEPMTY 88
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|3334489|sp|P15398|RPA1_SCHPO DNA-DIRECTED RNA POLYMERASE I
title          :            KD POLYPEPTIDE
length         :            Length = 1689
noevent        : 
*************** start_hsp
score          :  Score = 29.0 bits (63), Expect = 7.4
identities     :  Identities = 12/38 (31%), Positives = 20/38 (52%)
noevent        : 
query          : Query: 75  GILIVPMTIVHPEYFNEIIGRLRQEGRIVHHFTLMASK 112
align          :            G +++P+   HP +F+++   LR      HHF L   K
sbjct          : Sbjct: 78  GHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVK 115
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_database_report
database       :   Database: data/swissprot
posted_date    :     Posted date:  Nov 15, 1999  2:55 PM
num_letters_in_:   Number of letters in database: 29,652,561
num_sequences_i:   Number of sequences in database:  82,258
noevent        : 
noevent        : Lambda     K      H
ka_params      :    0.323    0.138    0.411
noevent        : 
noevent        : Lambda     K      H
ka_params_gap  :    0.270   0.0470    0.230
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: BLOSUM62
gap_penalties  : Gap Penalties: Existence: 11, Extension: 1
num_hits       : Number of Hits to DB: 11332752
num_sequences  : Number of Sequences: 82258
num_extends    : Number of extensions: 435116
num_good_extend: Number of successful extensions: 987
num_seqs_better: Number of sequences better than 10.0: 4
hsps_no_gap    : Number of HSP's better than 10.0 without gapping: 2
hsps_prelim_gap: Number of HSP's successfully gapped in prelim test: 2
hsps_prelim_gap: Number of HSP's that attempted gapping in prelim test: 985
hsps_gapped    : Number of HSP's gapped (non-prelim): 4
query_length   : length of query: 197
database_length: length of database: 29,652,561
effective_hsp_l: effective HSP length: 48
effective_query: effective length of query: 149
effective_datab: effective length of database: 25,704,177
effective_searc: effective search space: 3829922373
effective_searc: effective search space used: 3829922373
threshold      : T: 11
window_size    : A: 40
dropoff_1st_pas: X1: 16 ( 7.5 bits)
gap_x_dropoff  : X2: 38 (14.8 bits)
gap_x_dropoff_f: X3: 64 (24.9 bits)
gap_trigger    : S1: 41 (22.0 bits)
blast_cutoff   : S2: 62 (28.6 bits)
*************** end_parameters
************************************************** TESTING bt010
*************** start_header
version        : BLASTN 2.0.10 [Aug-26-1999]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|1348916|gb|G26684|G26684 human STS
query_info     : STS_D11570.gi|1375195|gb|G26945|G26945 human STS SHGC-32699.
query_info     :          (285 letters)
noevent        : 
database_info  : Database: data/sts
database_info  :            87,792 sequences; 31,998,854 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
noevent        : 
description_hea: 
description_hea: Sequences producing significant alignments:
noevent        : 
description    : gi|1348916|gb|G26684|G26684 human STS STS_D11570. >gi|1375195|g
description    : gi|720683|gb|G03725|G03725 human STS WI-344.
description    : gi|4516686|dbj|AU026763.1|AU026763 Rattus norvegicus, OTSUKA cl
description    : gi|6120827|gb|G55508.1|G55508 SHGC-100856 Human Homo sapiens ST
noevent        : 
*************** end_descriptions
*************** start_alignment
title          : >gi|1348916|gb|G26684|G26684 human STS STS_D11570.
title          :            >gi|1375195|gb|G26945|G26945 human STS SHGC-32699.
length         :            Length = 285
noevent        : 
*************** start_hsp
score          :  Score =  517 bits (261), Expect = e-146
identities     :  Identities = 285/285 (100%)
strand         :  Strand = Plus / Plus
noevent        : 
noevent        : 
query          : Query: 1   gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatc
align          :            ||||||||||||||||||||||||||||||||||||||||||||||||||||
sbjct          : Sbjct: 1   gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatc
noevent        : 
noevent        : 
query          : Query: 61  cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnac
align          :            ||||||||||||||||||||||||||||||||||||||||||||||||||||
sbjct          : Sbjct: 61  cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnac
noevent        : 
noevent        : 
query          : Query: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtn
align          :            ||||||||||||||||||||||||||||||||||||||||||||||||||||
sbjct          : Sbjct: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtn
noevent        : 
noevent        : 
query          : Query: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttg
align          :            ||||||||||||||||||||||||||||||||||||||||||||||||||||
sbjct          : Sbjct: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttg
noevent        : 
noevent        : 
query          : Query: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285
align          :            |||||||||||||||||||||||||||||||||||||||||||||
sbjct          : Sbjct: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|720683|gb|G03725|G03725 human STS WI-344.
length         :            Length = 246
noevent        : 
*************** start_hsp
score          :  Score = 32.2 bits (16), Expect = 1.6
identities     :  Identities = 16/16 (100%)
strand         :  Strand = Plus / Minus
noevent        : 
noevent        : 
query          : Query: 260 ctcaataaatgctagt 275
align          :            ||||||||||||||||
sbjct          : Sbjct: 178 ctcaataaatgctagt 163
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|4516686|dbj|AU026763.1|AU026763 Rattus norvegicus, OTSUKA c
title          :            OT33.16/752f07, microsatellite sequence, sequence ta
title          :            site
length         :            Length = 307
noevent        : 
*************** start_hsp
score          :  Score = 32.2 bits (16), Expect = 1.6
identities     :  Identities = 16/16 (100%)
strand         :  Strand = Plus / Plus
noevent        : 
noevent        : 
query          : Query: 221 ggaaagttcttgtagc 236
align          :            ||||||||||||||||
sbjct          : Sbjct: 32  ggaaagttcttgtagc 47
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|6120827|gb|G55508.1|G55508 SHGC-100856 Human Homo sapiens S
title          :            genomic, sequence tagged site
length         :            Length = 711
noevent        : 
*************** start_hsp
score          :  Score = 32.2 bits (16), Expect = 1.6
identities     :  Identities = 18/19 (94%)
strand         :  Strand = Plus / Plus
noevent        : 
noevent        : 
query          : Query: 210 gaaatnaaaatggaaagtt 228
align          :            ||||| |||||||||||||
sbjct          : Sbjct: 588 gaaataaaaatggaaagtt 606
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_database_report
database       :   Database: data/sts
posted_date    :     Posted date:  Nov 26, 1999  5:52 PM
num_letters_in_:   Number of letters in database: 31,998,854
num_sequences_i:   Number of sequences in database:  87,792
noevent        : 
noevent        : Lambda     K      H
ka_params      :     1.37    0.711     1.31
noevent        : 
gapped         : Gapped
noevent        : Lambda     K      H
ka_params_gap  :     1.37    0.711     1.31
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: blastn matrix:1 -3
gap_penalties  : Gap Penalties: Existence: 5, Extension: 2
num_hits       : Number of Hits to DB: 3835
num_sequences  : Number of Sequences: 87792
num_extends    : Number of extensions: 3835
num_good_extend: Number of successful extensions: 1155
num_seqs_better: Number of sequences better than 10.0: 4
query_length   : length of query: 285
database_length: length of database: 31,998,854
effective_hsp_l: effective HSP length: 17
effective_query: effective length of query: 268
effective_datab: effective length of database: 30,506,390
effective_searc: effective search space: 8175712520
effective_searc: effective search space used: 8175712520
threshold      : T: 0
window_size    : A: 0
dropoff_1st_pas: X1: 6 (11.9 bits)
gap_x_dropoff  : X2: 25 (49.6 bits)
gap_trigger    : S1: 12 (24.3 bits)
blast_cutoff   : S2: 15 (30.2 bits)
*************** end_parameters
************************************************** TESTING bt014
*************** start_header
version        : BLASTX 2.0.10 [Aug-26-1999]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|1347369|gb|G25137|G25137 human STS EST48004.
query_info     :          (556 letters)
noevent        : 
database_info  : Database: data/swissprot
database_info  :            82,258 sequences; 29,652,561 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
noevent        : 
description_hea: 
description_hea: Sequences producing significant alignments:
noevent        : 
description    : gi|1731448|sp|P54103|ZRF1_MOUSE ZUOTIN RELATED FACTOR-1
description    : gi|465911|sp|P34454|YMA9_CAEEL HYPOTHETICAL 31.6 KD PROTEIN F54
description    : gi|2494160|sp|Q61712|MTJ1_MOUSE DNAJ PROTEIN HOMOLOG MTJ1
description    : gi|1730688|sp|P53745|YN8X_YEAST HYPOTHETICAL 68.1 KD PROTEIN IN
noevent        : 
*************** end_descriptions
*************** start_alignment
title          : >gi|1731448|sp|P54103|ZRF1_MOUSE ZUOTIN RELATED FACTOR-1
length         :            Length = 514
noevent        : 
*************** start_hsp
score          :  Score = 86.6 bits (211), Expect = 3e-17
identities     :  Identities = 41/47 (87%), Positives = 44/47 (93%)
frame          :  Frame = +1
noevent        : 
query          : Query: 1   DLQLLIKAVNLFPAGTNSRWEVIANYMNIHSSSGVKRTAKDVIGKAK 141
align          :            DLQLLIKAVNLFPAG NSRW+VIANYMNIHSSSGVKRTAKDVI + +
sbjct          : Sbjct: 458 DLQLLIKAVNLFPAGRNSRWDVIANYMNIHSSSGVKRTAKDVISEVR 504
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|465911|sp|P34454|YMA9_CAEEL HYPOTHETICAL 31.6 KD PROTEIN F5
title          :            IN CHROMOSOME III
length         :            Length = 275
noevent        : 
*************** start_hsp
score          :  Score = 41.8 bits (96), Expect = 0.001
identities     :  Identities = 30/122 (24%), Positives = 54/122 (43%)
frame          :  Frame = +1
noevent        : 
query          : Query: 34  FPAGTNSRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKK
align          :            +PAGT +RWE +   +N        R+A+DVI  A  ++++   +++D  K
sbjct          : Sbjct: 159 YPAGTPNRWEQMGRVLN--------RSAEDVIAMAGKMKQM---KQEDYTKL
noevent        : 
query          : Query: 214 HGVVPQADNATPSERFXGPYTDFTPXTTEXQKLXEQALNTYPVNTXERWXXI
align          :              V  ++++                 +   QK  E AL  YP  T ERW  I
sbjct          : Sbjct: 208 VPVEEKSED---------------DWSQAEQKAFETALQKYPKGTDERWERI
noevent        : 
query          : Query: 394 KE 399
align          :            K+
sbjct          : Sbjct: 253 KK 254
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|2494160|sp|Q61712|MTJ1_MOUSE DNAJ PROTEIN HOMOLOG MTJ1
length         :            Length = 552
noevent        : 
*************** start_hsp
score          :  Score = 36.7 bits (83), Expect = 0.033
identities     :  Identities = 17/36 (47%), Positives = 19/36 (52%)
frame          :  Frame = +1
noevent        : 
query          : Query: 292 TTEXQKLXEQALNTYPVNTXERWXXIAVAVPGRXKE 399
align          :            T   QKL E AL  YP    +RW  IA  VP + KE
sbjct          : Sbjct: 496 TQSQQKLLELALQQYPKGASDRWDKIAKCVPSKSKE 531
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score = 31.3 bits (69), Expect = 1.5
identities     :  Identities = 18/50 (36%), Positives = 26/50 (52%)
frame          :  Frame = +1
noevent        : 
query          : Query: 1   DLQLLIKAVNLFPAGTNSRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQ 1
align          :            DL  L +++  FP GT  RW+ IA+ +         R+  DV  KAK L+
sbjct          : Sbjct: 332 DLSQLTRSMVKFPGGTPGRWDKIAHELG--------RSVTDVTTKAKELK 3
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1730688|sp|P53745|YN8X_YEAST HYPOTHETICAL 68.1 KD PROTEIN I
title          :            BIO3-FRE4 INTERGENIC REGION
length         :            Length = 580
noevent        : 
*************** start_hsp
score          :  Score = 29.0 bits (63), Expect = 7.4
identities     :  Identities = 27/99 (27%), Positives = 41/99 (41%)
frame          :  Frame = +1
noevent        : 
query          : Query: 52  SRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFK
align          :            +RW+   +Y        V R+ KDV   ++SL  LD +QK     +A
sbjct          : Sbjct: 75  NRWKSFISY--------VTRSRKDVKTVSRSLSNLDLYQKCSKEIRADQDIS
noevent        : 
query          : Query: 232 ADNATPSERFXGPYTDFTPXTTEXQKLXEQALNTYPVNT 348
align          :                   E    PY +FT   +      EQ+ N +PV+T
sbjct          : Sbjct: 124 -------ETKLFPYINFTALNS------EQSHNFWPVHT 149
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_database_report
database       :   Database: data/swissprot
posted_date    :     Posted date:  Nov 15, 1999  2:55 PM
num_letters_in_:   Number of letters in database: 29,652,561
num_sequences_i:   Number of sequences in database:  82,258
noevent        : 
noevent        : Lambda     K      H
ka_params      :    0.318    0.135    0.401
noevent        : 
gapped         : Gapped
noevent        : Lambda     K      H
ka_params_gap  :    0.270   0.0470    0.230
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: BLOSUM62
gap_penalties  : Gap Penalties: Existence: 11, Extension: 1
num_hits       : Number of Hits to DB: 23174157
num_sequences  : Number of Sequences: 82258
num_extends    : Number of extensions: 387821
num_good_extend: Number of successful extensions: 980
num_seqs_better: Number of sequences better than 10.0: 8
hsps_no_gap    : Number of HSP's better than 10.0 without gapping: 3
hsps_prelim_gap: Number of HSP's successfully gapped in prelim test: 1
hsps_prelim_gap: Number of HSP's that attempted gapping in prelim test: 973
hsps_gapped    : Number of HSP's gapped (non-prelim): 7
query_length   : length of query: 185
database_length: length of database: 29,652,561
effective_hsp_l: effective HSP length: 49
effective_query: effective length of query: 135
effective_datab: effective length of database: 25,621,919
effective_searc: effective search space: 3458959065
effective_searc: effective search space used: 3458959065
frameshift     : frameshift window, decay const: 50,  0.1
threshold      : T: 12
window_size    : A: 40
dropoff_1st_pas: X1: 16 ( 7.3 bits)
gap_x_dropoff  : X2: 38 (14.8 bits)
gap_x_dropoff_f: X3: 64 (24.9 bits)
gap_trigger    : S1: 41 (21.7 bits)
blast_cutoff   : S2: 62 (28.6 bits)
*************** end_parameters
************************************************** TESTING bt016
*************** start_header
version        : TBLASTN 2.0.10 [Aug-26-1999]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|729325|sp|P39483|DHG2_BACME GLUCOSE 1-DEHYDROGENASE I
query_info     : (GLCDH-II)
query_info     :          (261 letters)
noevent        : 
database_info  : Database: data/sts
database_info  :            87,792 sequences; 31,998,854 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
noevent        : 
description_hea: 
description_hea: Sequences producing significant alignments:
noevent        : 
description    : gi|3820341|emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragm
description    : gi|1375419|gb|G27169|G27169 human STS SHGC-31983.
description    : gi|3819804|emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragm
description    : gi|1375215|gb|G26965|G26965 human STS SHGC-31083.
description    : gi|177714|gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-109
description    : gi|5714409|gb|AF106665.1|AF106665 Mus musculus chromosome 6 clo
description    : gi|1341648|gb|G21322|G21322 human STS WI-12250.
noevent        : 
*************** end_descriptions
*************** start_alignment
title          : >gi|3820341|emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA frag
title          :            for sequence tagged site, clone okam5d07r [Kluyverom
title          :            lactis]
length         :            Length = 230
noevent        : 
*************** start_hsp
score          :  Score = 46.9 bits (109), Expect = 1e-05
identities     :  Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 3/72
frame          :  Frame = +1
noevent        : 
query          : Query: 108 NWNQVIDTNLTGAFLGSREAIKYFVEN---DIKGNVINMSSVHEMIPWPLFV
align          :            +W QVIDTN+ G F   + A+     +   D +  V+N+S+V+ ++  P
sbjct          : Sbjct: 1   SWRQVIDTNINGTFYTLKYALPLMESSSSPDSEAAVVNLSAVNGLVGIPGIS
noevent        : 
query          : Query: 165 MKLMTETLALEYAPK 179
align          :            +  +T+++ALEYA +
sbjct          : Sbjct: 181 VIGITQSVALEYAER 225
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1375419|gb|G27169|G27169 human STS SHGC-31983.
length         :            Length = 594
noevent        : 
*************** start_hsp
score          :  Score = 43.4 bits (100), Expect = 1e-04
identities     :  Identities = 21/73 (28%), Positives = 34/73 (45%)
frame          :  Frame = -1
noevent        : 
query          : Query: 177 APKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVA
align          :            AP   RVN + P  + T +    + DP +   + +  P+G   + E +
sbjct          : Sbjct: 312 APXRXRVNAVXPXVVMTSMGQATWXDPXKAXTMLNRXPLGXFAEVEHVVKAI
noevent        : 
query          : Query: 237 SYVTGITLFADGG 249
align          :               TG TL  +GG
sbjct          : Sbjct: 132 GMTTGSTLPVEGG 94
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|3819804|emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA frag
title          :            for sequence tagged site, clone okam6d01d [Kluyverom
title          :            lactis]
length         :            Length = 199
noevent        : 
*************** start_hsp
score          :  Score = 39.5 bits (90), Expect = 0.002
identities     :  Identities = 18/49 (36%), Positives = 26/49 (52%)
frame          :  Frame = -1
noevent        : 
query          : Query: 200 FADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADG 24
align          :            F D + +    S+IPMG  G P+E+     + AS  ++Y TG  L  DG
sbjct          : Sbjct: 157 FVDEDLKNKWHSLIPMGREGLPQELVGAYLYFASDASTYTTGSDLLVDG 11
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1375215|gb|G26965|G26965 human STS SHGC-31083.
length         :            Length = 268
noevent        : 
*************** start_hsp
score          :  Score = 30.9 bits (68), Expect = 0.73
identities     :  Identities = 12/37 (32%), Positives = 19/37 (50%)
frame          :  Frame = -1
noevent        : 
query          : Query: 214 PMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGM 250
align          :            PMG  G PE++  V A      +  +TG ++   GG+
sbjct          : Sbjct: 268 PMGXXGDPEDVXDVXAXXXXEXSGXITGTSVEVTGGL 158
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|177714|gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-10
title          :            STS4-889.
length         :            Length = 412
noevent        : 
*************** start_hsp
score          :  Score = 29.3 bits (64), Expect = 2.2
identities     :  Identities = 14/34 (41%), Positives = 22/34 (64%)
frame          :  Frame = -1
noevent        : 
query          : Query: 7   DKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRS 40
align          :            DKV  V GGS+G+GRA+A    ++  ++ V  R+
sbjct          : Sbjct: 316 DKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARN 215
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|5714409|gb|AF106665.1|AF106665 Mus musculus chromosome 6 cl
title          :            D6wum9 map between Nkrp1 and Prp strain C57BL/6J,
title          :            sequence tagged site
length         :            Length = 299
noevent        : 
*************** start_hsp
score          :  Score = 29.3 bits (64), Expect = 2.2
identities     :  Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 2/55
frame          :  Frame = -2
noevent        : 
query          : Query: 142 NMSSVHEMIPWPLFVHYAASKGGMKLMTETL--ALEYAPKGIRVNNIGPGAI
align          :            ++S    +I +P F+    S  G  L+  +L  A+ + P GI V+++GP ++
sbjct          : Sbjct: 172 SLSPTQYLIMFPSFLPCPLSHPGPFLLPSSLVIAVFFLPNGIEVSSLGPFSL
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1341648|gb|G21322|G21322 human STS WI-12250.
length         :            Length = 586
noevent        : 
*************** start_hsp
score          :  Score = 28.6 bits (62), Expect = 3.7
identities     :  Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39
frame          :  Frame = +1
noevent        : 
query          : Query: 98  PVPSHELSLENWNQ-VIDTNLTGAFLGSREAIKYFVENDI 136
align          :            PVP  ELS  +W+Q  + T+ T  F  S     YF  N I
sbjct          : Sbjct: 220 PVPMQELSKVHWSQFFLTTSPTMTFFFSHYLANYFFRNSI 339
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_database_report
database       :   Database: data/sts
posted_date    :     Posted date:  Nov 26, 1999  5:52 PM
num_letters_in_:   Number of letters in database: 31,998,854
num_sequences_i:   Number of sequences in database:  87,792
noevent        : 
noevent        : Lambda     K      H
ka_params      :    0.315    0.134    0.378
noevent        : 
gapped         : Gapped
noevent        : Lambda     K      H
ka_params_gap  :    0.270   0.0470    0.230
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: BLOSUM62
gap_penalties  : Gap Penalties: Existence: 11, Extension: 1
num_hits       : Number of Hits to DB: 6165875
num_sequences  : Number of Sequences: 87792
num_extends    : Number of extensions: 55665
num_good_extend: Number of successful extensions: 148
num_seqs_better: Number of sequences better than 10.0: 14
hsps_no_gap    : Number of HSP's better than 10.0 without gapping: 5
hsps_prelim_gap: Number of HSP's successfully gapped in prelim test: 2
hsps_prelim_gap: Number of HSP's that attempted gapping in prelim test: 142
hsps_gapped    : Number of HSP's gapped (non-prelim): 7
query_length   : length of query: 261
database_length: length of database: 10,666,284
effective_hsp_l: effective HSP length: 50
effective_query: effective length of query: 211
effective_datab: effective length of database: 6,276,684
effective_searc: effective search space: 1324380324
effective_searc: effective search space used: 1324380324
frameshift     : frameshift window, decay const: 50,  0.1
threshold      : T: 13
window_size    : A: 40
dropoff_1st_pas: X1: 16 ( 7.3 bits)
gap_x_dropoff  : X2: 38 (14.8 bits)
gap_x_dropoff_f: X3: 64 (24.9 bits)
gap_trigger    : S1: 42 (22.0 bits)
blast_cutoff   : S2: 58 (27.0 bits)
*************** end_parameters
************************************************** TESTING bt018
*************** start_header
version        : TBLASTX 2.0.10 [Aug-26-1999]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|1348853|gb|G26621|G26621 human STS
query_info     : STS_D12006.gi|1396339|gb|G27620|G27620 human STS SHGC-32705.
query_info     :          (615 letters)
noevent        : 
database_info  : Database: data/sts
database_info  :            87,792 sequences; 31,998,854 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
noevent        : 
description_hea: 
description_hea: Sequences producing significant alignments:
noevent        : 
description    : gi|1348853|gb|G26621|G26621 human STS STS_D12006. >gi|1396339|g
description    : gi|1348016|gb|G25784|G25784 human STS EST47998.
description    : gi|3403105|gb|G41148|G41148 Z7324 Zebrafish AB Danio rerio STS
description    : gi|1234967|emb|Z53521|HSB316XA9 H.sapiens (D22S1166) DNA segmen
description    : gi|4185670|gb|G42865|G42865 Xq3845 KWOK Homo sapiens STS genomi
description    : gi|4757419|gb|G49246.1|G49246 stbK116F5_30376 chromosome 22 gen
description    : gi|6120694|gb|G55375.1|G55375 SHGC-100697 Human Homo sapiens ST
description    : gi|5225124|gb|G53947.1|G53947 SHGC-85304 Human Homo sapiens STS
description    : gi|1311530|gb|L77996|HUMSWX945 Human chromosome X STS sWXD945,
description    : gi|2734624|gb|G36957|G36957 SHGC-56642 Human Homo sapiens STS c
description    : gi|4631600|dbj|AU046965.1|AU046965 Rattus norvegicus, OTSUKA cl
description    : gi|4631518|dbj|AU046883.1|AU046883 Rattus norvegicus, OTSUKA cl
description    : gi|2226478|gb|G33174|G33174 human STS SHGC-6097 clone pG-2470
description    : gi|938611|gb|G08061|G08061 human STS CHLC.GGAA7E02.P7438 clone
description    : gi|307789|gb|L18105|HUMUT1736 Human STS UT1736.
description    : gi|859804|gb|G06559|G06559 human STS WI-7401.
description    : gi|4493143|gb|G46852.1|G46852 Z14841_1 Zebrafish AB Danio rerio
description    : gi|4492122|gb|G45831.1|G45831 Z4588_1 Zebrafish AB Danio rerio
description    : gi|6121804|gb|G56635.1|G56635 SHGC-102032 Human Homo sapiens ST
noevent        : 
*************** end_descriptions
*************** start_alignment
title          : >gi|1348853|gb|G26621|G26621 human STS STS_D12006.
title          :            >gi|1396339|gb|G27620|G27620 human STS SHGC-32705.
length         :            Length = 615
noevent        : 
*************** start_hsp
score          :  Score =  367 bits (796), Expect = e-102
identities     :  Identities = 192/200 (96%), Positives = 192/200 (96%)
frame          :  Frame = +2 / +2
noevent        : 
noevent        : 
query          : Query: 2   IRMPLHS*DSSFCPL*QEKWECMXXXXXXXXRPKRCLQPHPLNWP*LGLNAL
align          :            IRMPLHS*DSSFCPL*QEKWECM        RPKRCLQPHPLNWP*LGLNAL
sbjct          : Sbjct: 2   IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNAL
noevent        : 
noevent        : 
query          : Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQ
align          :            HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQ
sbjct          : Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQ
noevent        : 
noevent        : 
query          : Query: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXX
align          :            S*NGFPKLVTHGPG V L L GLSSFQEF STVANPWG *         F
sbjct          : Sbjct: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXX
noevent        : 
noevent        : 
query          : Query: 542 XXXGGCXXVXXVXXXWXXXF 601
align          :               GGC  V  V   W   F
sbjct          : Sbjct: 542 XXXGGCXXVXXVXXXWXXXF 601
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  350 bits (759), Expect = 3e-97
identities     :  Identities = 195/205 (95%), Positives = 195/205 (95%)
frame          :  Frame = +1 / +1
noevent        : 
noevent        : 
query          : Query: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCT
align          :            DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCT
sbjct          : Sbjct: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCT
noevent        : 
noevent        : 
query          : Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYT
align          :            A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYT
sbjct          : Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYT
noevent        : 
noevent        : 
query          : Query: 361 ILKWISKAGYTWPWXXXIXFXXAFFXXXXXXXXXXXXXXLXGXVX*XXXXSX
align          :            ILKWISKAGYTWPW   I F  AFF              L G V *    S
sbjct          : Sbjct: 361 ILKWISKAGYTWPWXXXIXFXXAFFXSGVXVNGGKSXGXLXGXVX*XXXXSX
noevent        : 
noevent        : 
query          : Query: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615
align          :             P GWV  G F F      F   LG
sbjct          : Sbjct: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  180 bits (387), Expect(2) = 9e-91
identities     :  Identities = 74/74 (100%), Positives = 74/74 (100%)
frame          :  Frame = +3 / +3
noevent        : 
noevent        : 
query          : Query: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*
align          :            SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*
sbjct          : Sbjct: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*
noevent        : 
noevent        : 
query          : Query: 183 IGYFKPALFFM*PV 224
align          :            IGYFKPALFFM*PV
sbjct          : Sbjct: 183 IGYFKPALFFM*PV 224
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  171 bits (368), Expect(2) = 9e-91
identities     :  Identities = 114/114 (100%), Positives = 114/114 (100%)
frame          :  Frame = +3 / +3
noevent        : 
noevent        : 
query          : Query: 273 YSHCSGGQIT*VLQILAGKIYSIMXQHSXNPKMDFQSWLHMALXXSY*XXXG
align          :            YSHCSGGQIT*VLQILAGKIYSIM QHS NPKMDFQSWLHMAL  SY*   G
sbjct          : Sbjct: 273 YSHCSGGQIT*VLQILAGKIYSIMXQHSXNPKMDFQSWLHMALXXSY*XXXG
noevent        : 
noevent        : 
query          : Query: 453 QRWQIXGVXXWXGXLXXXXFXGAXGGXGXXSXXVGAXGXXXFXXXGXXXXXX
align          :            QRWQI GV  W G L    F GA GG G  S  VGA G   F   G
sbjct          : Sbjct: 453 QRWQIXGVXXWXGXLXXXXFXGAXGGXGXXSXXVGAXGXXXFXXXGXXXXXX
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  398 bits (864), Expect = e-111
identities     :  Identities = 205/205 (100%), Positives = 205/205 (100%)
frame          :  Frame = -1 / -1
noevent        : 
noevent        : 
query          : Query: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFA
align          :            PK   K      KTK T  HPP W  N   LWP      L N   * P GFA
sbjct          : Sbjct: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFA
noevent        : 
noevent        : 
query          : Query: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNN
align          :            EESP K N T PGPCVTSFGNPF*DY SA S*CCIFFLPGFGVPRLFVHQNN
sbjct          : Sbjct: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNN
noevent        : 
noevent        : 
query          : Query: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRF
align          :            VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRF
sbjct          : Sbjct: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRF
noevent        : 
noevent        : 
query          : Query: 75  LCIHSHFSCQSGQNEESHEWRGILI 1
align          :            LCIHSHFSCQSGQNEESHEWRGILI
sbjct          : Sbjct: 75  LCIHSHFSCQSGQNEESHEWRGILI 1
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  390 bits (846), Expect = e-109
identities     :  Identities = 196/196 (100%), Positives = 196/196 (100%)
frame          :  Frame = -3 / -3
noevent        : 
noevent        : 
query          : Query: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKX
align          :            P   N  NP APT    *P PP AP K      P  L TP ICHR*PKLLK
sbjct          : Sbjct: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKX
noevent        : 
noevent        : 
query          : Query: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSS
align          :            D  RAMCNQLWKSILGL EC FIMLYIFPARIWST*VICPPEQWL*RRKLSS
sbjct          : Sbjct: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSS
noevent        : 
noevent        : 
query          : Query: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRA
align          :            GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRA
sbjct          : Sbjct: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRA
noevent        : 
noevent        : 
query          : Query: 49  SKWTK*RVS*VEGHSD 2
align          :            SKWTK*RVS*VEGHSD
sbjct          : Sbjct: 49  SKWTK*RVS*VEGHSD 2
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  316 bits (684), Expect = 7e-87
identities     :  Identities = 146/146 (100%), Positives = 146/146 (100%)
frame          :  Frame = -2 / -2
noevent        : 
noevent        : 
query          : Query: 440 EXKKAXXXSIXXXQGHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTR
align          :            E KKA   SI   QGHV*PALEIHFRIT*VL HNAVYFSCQDLEYLGYLSTR
sbjct          : Sbjct: 440 EXKKAXXXSIXXXQGHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTR
noevent        : 
noevent        : 
query          : Query: 260 EQWSEAAEKMR*NRLHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGT
align          :            EQWSEAAEKMR*NRLHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGT
sbjct          : Sbjct: 260 EQWSEAAEKMR*NRLHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGT
noevent        : 
noevent        : 
query          : Query: 80  ESSAYIPTFPVKVDKMKSLMSGGAF* 3
align          :            ESSAYIPTFPVKVDKMKSLMSGGAF*
sbjct          : Sbjct: 80  ESSAYIPTFPVKVDKMKSLMSGGAF* 3
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1348016|gb|G25784|G25784 human STS EST47998.
length         :            Length = 617
noevent        : 
*************** start_hsp
score          :  Score =  170 bits (366), Expect(2) = 3e-63
identities     :  Identities = 71/74 (95%), Positives = 71/74 (95%)
frame          :  Frame = +3 / +3
noevent        : 
noevent        : 
query          : Query: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*
align          :            S CPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*  *
sbjct          : Sbjct: 3   SXCPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*XX*
noevent        : 
noevent        : 
query          : Query: 183 IGYFKPALFFM*PV 224
align          :            IGYFKPALFFM*PV
sbjct          : Sbjct: 183 IGYFKPALFFM*PV 224
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score = 89.0 bits (188), Expect(2) = 3e-63
identities     :  Identities = 42/67 (62%), Positives = 43/67 (63%)
frame          :  Frame = +3 / +3
noevent        : 
noevent        : 
query          : Query: 273 YSHCSGGQIT*VLQILAGKIYSIMXQHSXNPKMDFQSWLHMALXXSY*XXXG
align          :            YSHCSGGQIT*VLQILAGKIYSIM QHS   K  FQSWLHM     +
sbjct          : Sbjct: 273 YSHCSGGQIT*VLQILAGKIYSIMKQHSVILKWIFQSWLHMXCKVLFKFKRP
noevent        : 
noevent        : 
query          : Query: 453 QRWQIXG 473
align          :            QR Q  G
sbjct          : Sbjct: 453 QRXQTPG 473
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  273 bits (590), Expect = 7e-74
identities     :  Identities = 121/133 (90%), Positives = 121/133 (90%)
frame          :  Frame = +1 / +1
noevent        : 
noevent        : 
query          : Query: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCT
align          :            DQ APPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTK
sbjct          : Sbjct: 1   DQXAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKXX
noevent        : 
noevent        : 
query          : Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYT
align          :            A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYT
sbjct          : Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYT
noevent        : 
noevent        : 
query          : Query: 361 ILKWISKAGYTWP 399
align          :                 SKAGYT P
sbjct          : Sbjct: 361 S*NGFSKAGYTXP 399
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  274 bits (593), Expect(2) = 8e-76
identities     :  Identities = 112/131 (85%), Positives = 112/131 (85%)
frame          :  Frame = +2 / +2
noevent        : 
noevent        : 
query          : Query: 2   IRMPLHS*DSSFCPL*QEKWECMXXXXXXXXRPKRCLQPHPLNWP*LGLNAL
align          :            IR PLHS*DSSFCPL*QEKWECM        RPKRCLQPHPLNWP*LGL  L
sbjct          : Sbjct: 2   IRXPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLXPL
noevent        : 
noevent        : 
query          : Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQ
align          :            HRLFQTSIVFYVTCFTASSQQLLTTAQF PLQPLFWWTNNLGTPNPGRKNIQ
sbjct          : Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFFPLQPLFWWTNNLGTPNPGRKNIQ
noevent        : 
noevent        : 
query          : Query: 362 S*NGFPKLVTH 394
align          :                FPKLVTH
sbjct          : Sbjct: 362 PKMDFPKLVTH 394
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score = 27.2 bits (53), Expect(2) = 8e-76
identities     :  Identities = 9/13 (69%), Positives = 10/13 (76%)
frame          :  Frame = +2 / +2
noevent        : 
noevent        : 
query          : Query: 437 FQEFXSTVANPWG 475
align          :            +Q F ST ANPWG
sbjct          : Sbjct: 437 YQGFRSTXANPWG 475
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  302 bits (653), Expect = 1e-82
identities     :  Identities = 128/157 (81%), Positives = 132/157 (83%)
frame          :  Frame = -3 / -2
noevent        : 
noevent        : 
query          : Query: 472 PXICHR*PKLLKXRKPX*XQXDXXRAMCNQLWKSILGLXECXFIMLYIFPAR
align          :            P +C R*PK L   K         + MCNQLWK    + EC FIMLYIFPAR
sbjct          : Sbjct: 472 PGVCXR*PKPLVNEKGLLNLNKTLQXMCNQLWKIHFRITECCFIMLYIFPAR
noevent        : 
noevent        : 
query          : Query: 292 PPEQWL*RRKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*CI*SKS
align          :            PPEQWL*R+KLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*  *SKS
sbjct          : Sbjct: 292 PPEQWL*RKKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*XX*SKS
noevent        : 
noevent        : 
query          : Query: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHSD 2
align          :            KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEG SD
sbjct          : Sbjct: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGXSD 2
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  276 bits (598), Expect = 5e-75
identities     :  Identities = 122/130 (93%), Positives = 122/130 (93%)
frame          :  Frame = -2 / -1
noevent        : 
noevent        : 
query          : Query: 398 GHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEA
align          :            GHV*PALE  F   *VL HNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEA
sbjct          : Sbjct: 398 GHV*PALENPF*DY*VLFHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEA
noevent        : 
noevent        : 
query          : Query: 218 LHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYI
align          :            LHKKQCWFEITYALLSRDFAL  LVQVRANSEDVAEGTVLAFFVSFESSAYI
sbjct          : Sbjct: 218 LHKKQCWFEITYALLSRDFALXXLVQVRANSEDVAEGTVLAFFVSFESSAYI
noevent        : 
noevent        : 
query          : Query: 38  KMKSLMSGGA 9
align          :            KMKSLMSGGA
sbjct          : Sbjct: 38  KMKSLMSGGA 9
noevent        : 
noevent        : 
*************** end_hsp
*************** start_hsp
score          :  Score =  290 bits (628), Expect = 4e-79
identities     :  Identities = 119/131 (90%), Positives = 120/131 (90%)
frame          :  Frame = -1 / -3
noevent        : 
noevent        : 
query          : Query: 393 CVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*AVVRSC*
align          :            CVTSFG       SA S*CCIFFLPGFGVPRLFVHQNNGCKG+N*AVVRSC*
sbjct          : Sbjct: 393 CVTSFGKSILGLLSAVS*CCIFFLPGFGVPRLFVHQNNGCKGKN*AVVRSC*
noevent        : 
noevent        : 
query          : Query: 213 *KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSH
align          :            *KTMLV*NNLCAFVKGFCI  FSPSQGQFRGCG*RHRFGLFCFF*ELCIHSH
sbjct          : Sbjct: 213 *KTMLV*NNLCAFVKGFCIXGFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSH
noevent        : 
noevent        : 
query          : Query: 33  EESHEWRGILI 1
align          :            EESHEWRG LI
sbjct          : Sbjct: 33  EESHEWRGXLI 1
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|3403105|gb|G41148|G41148 Z7324 Zebrafish AB Danio rerio STS
title          :            genomic
length         :            Length = 351
noevent        : 
*************** start_hsp
score          :  Score = 30.8 bits (61), Expect = 0.60
identities     :  Identities = 11/27 (40%), Positives = 18/27 (65%)
frame          :  Frame = +1 / +2
noevent        : 
noevent        : 
query          : Query: 211 LCNLFYRIFSAASDHCSIFSFTAIVLV 291
align          :            L NL +R+F++  DHCS+  F   V++
sbjct          : Sbjct: 2   LTNLIFRLFTSK*DHCSLKQFNNKVVI 82
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1234967|emb|Z53521|HSB316XA9 H.sapiens (D22S1166) DNA segme
title          :            containing (CA) repeat; clone AFMb316xa9; single rea
title          :            sequence tagged site [Homo sapiens]
length         :            Length = 345
noevent        : 
*************** start_hsp
score          :  Score = 30.4 bits (60), Expect = 0.83
identities     :  Identities = 10/19 (52%), Positives = 13/19 (67%)
frame          :  Frame = -3 / +1
noevent        : 
noevent        : 
query          : Query: 316 IWST*VICPPEQWL*RRKL 260
align          :            +W T  +CPP  W *RR+L
sbjct          : Sbjct: 226 LWGTAPLCPPVPWA*RRQL 282
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|4185670|gb|G42865|G42865 Xq3845 KWOK Homo sapiens STS genom
title          :            sequence tagged site [Homo sapiens]
length         :            Length = 1200
noevent        : 
*************** start_hsp
score          :  Score = 29.9 bits (59), Expect = 1.1
identities     :  Identities = 10/24 (41%), Positives = 14/24 (57%)
frame          :  Frame = -3 / -2
noevent        : 
noevent        : 
query          : Query: 106 PFWPFLFLLRALHTFPLFLSKWTK 35
align          :            P WP + LL  +H+FP  +  W K
sbjct          : Sbjct: 716 PEWPSINLLPGMHSFPRVIPCWEK 645
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|4757419|gb|G49246.1|G49246 stbK116F5_30376 chromosome 22 ge
title          :            clone Homo sapiens STS genomic clone 116F5, sequence
title          :            tagged site
length         :            Length = 375
noevent        : 
*************** start_hsp
score          :  Score = 29.5 bits (58), Expect = 1.6
identities     :  Identities = 15/34 (44%), Positives = 17/34 (49%)
frame          :  Frame = -3 / -2
noevent        : 
noevent        : 
query          : Query: 106 PFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHS 5
align          :            P W   FLLR LHT P    K+    V+  EG S
sbjct          : Sbjct: 176 PGWTLRFLLRGLHTPPKAAEKFPSQGVAEPEGFS 75
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|6120694|gb|G55375.1|G55375 SHGC-100697 Human Homo sapiens S
title          :            genomic, sequence tagged site
length         :            Length = 460
noevent        : 
*************** start_hsp
score          :  Score = 28.6 bits (56), Expect = 3.0
identities     :  Identities = 9/28 (32%), Positives = 16/28 (57%)
frame          :  Frame = +3 / +1
noevent        : 
noevent        : 
query          : Query: 15  STHETLHFVHFDRKSGNVCRALKRNKKG 98
align          :            +TH    F+H  +K  N+C  +  N++G
sbjct          : Sbjct: 82  TTHSMTVFLHVKKKLSNICIYMPENREG 165
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|5225124|gb|G53947.1|G53947 SHGC-85304 Human Homo sapiens ST
title          :            genomic, sequence tagged site
length         :            Length = 444
noevent        : 
*************** start_hsp
score          :  Score = 28.6 bits (56), Expect = 3.0
identities     :  Identities = 10/24 (41%), Positives = 15/24 (61%)
frame          :  Frame = +1 / -2
noevent        : 
noevent        : 
query          : Query: 202 HCFLCNLFYRIFSAASDHCSIFSF 273
align          :            HC L ++F RIF    +  S+F+F
sbjct          : Sbjct: 443 HCHLSSVFCRIFFTLEESLSLFAF 372
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|1311530|gb|L77996|HUMSWX945 Human chromosome X STS sWXD945,
title          :            single read.
length         :            Length = 196
noevent        : 
*************** start_hsp
score          :  Score = 28.1 bits (55), Expect = 4.1
identities     :  Identities = 9/33 (27%), Positives = 19/33 (57%)
frame          :  Frame = +3 / -2
noevent        : 
noevent        : 
query          : Query: 24  ETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHI 122
align          :            E +H+V F +  G +  + ++ ++ QN   SH+
sbjct          : Sbjct: 141 EKIHYVLF*KNCGKIMTS*RQRQENQNNLLSHV 43
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|2734624|gb|G36957|G36957 SHGC-56642 Human Homo sapiens STS
length         :            Length = 466
noevent        : 
*************** start_hsp
score          :  Score = 28.1 bits (55), Expect = 4.1
identities     :  Identities = 10/15 (66%), Positives = 11/15 (72%)
frame          :  Frame = -3 / -3
noevent        : 
noevent        : 
query          : Query: 115 LKAPFWPFLFLLRAL 71
align          :            L  PFW FLF L+AL
sbjct          : Sbjct: 242 LSVPFWKFLFYLQAL 198
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|4631600|dbj|AU046965.1|AU046965 Rattus norvegicus, OTSUKA c
title          :            108a02, microsatellite sequence, sequence tagged sit
length         :            Length = 330
noevent        : 
*************** start_hsp
score          :  Score = 28.1 bits (55), Expect = 4.1
identities     :  Identities = 12/39 (30%), Positives = 19/39 (47%)
frame          :  Frame = +2 / -3
noevent        : 
noevent        : 
query          : Query: 167 PLTKAHRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPL 283
align          :            PL    RLF + +  ++ C T     L  +  F P++PL
sbjct          : Sbjct: 211 PLKTQGRLFYSKVSLFLKCRTTLCLFLNVSEGFXPIEPL 95
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|4631518|dbj|AU046883.1|AU046883 Rattus norvegicus, OTSUKA c
title          :            085f03, microsatellite sequence, sequence tagged sit
length         :            Length = 351
noevent        : 
*************** start_hsp
score          :  Score = 28.1 bits (55), Expect = 4.1
identities     :  Identities = 8/26 (30%), Positives = 15/26 (56%)
frame          :  Frame = +1 / +3
noevent        : 
noevent        : 
query          : Query: 205 CFLCNLFYRIFSAASDHCSIFSFTAI 282
align          :            CF+C L  +I+  A +   +  FT++
sbjct          : Sbjct: 249 CFICKLVLKIYLRAEERTQLIEFTSL 326
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|2226478|gb|G33174|G33174 human STS SHGC-6097 clone pG-2470
length         :            Length = 299
noevent        : 
*************** start_hsp
score          :  Score = 28.1 bits (55), Expect = 4.1
identities     :  Identities = 13/38 (34%), Positives = 19/38 (49%)
frame          :  Frame = +1 / +2
noevent        : 
noevent        : 
query          : Query: 175 KSA*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVL 288
align          :            +SA +I   HC    +   +FS ASD  S    T ++L
sbjct          : Sbjct: 119 QSAWIIGMSHCAWAVIHCLLFSTASDEKSAVDLTGVLL 232
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|938611|gb|G08061|G08061 human STS CHLC.GGAA7E02.P7438 clone
title          :            GGAA7E02
length         :            Length = 338
noevent        : 
*************** start_hsp
score          :  Score = 27.2 bits (53), Expect = 7.7
identities     :  Identities = 12/24 (50%), Positives = 13/24 (54%)
frame          :  Frame = -3 / +3
noevent        : 
noevent        : 
query          : Query: 118 WLKAPFWPFLFLLRALHTFPLFLS 47
align          :            WL  PF PFL  L +L   P  LS
sbjct          : Sbjct: 153 WLLFPFLPFLPFLPSLPFLPFLLS 224
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|307789|gb|L18105|HUMUT1736 Human STS UT1736.
length         :            Length = 355
noevent        : 
*************** start_hsp
score          :  Score = 27.2 bits (53), Expect = 7.7
identities     :  Identities = 12/24 (50%), Positives = 13/24 (54%)
frame          :  Frame = -3 / -1
noevent        : 
noevent        : 
query          : Query: 118 WLKAPFWPFLFLLRALHTFPLFLS 47
align          :            WL  PF PFL  L +L   P  LS
sbjct          : Sbjct: 235 WLLFPFLPFLPFLPSLPFLPFLLS 164
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|859804|gb|G06559|G06559 human STS WI-7401.
length         :             Length = 3280
noevent        : 
*************** start_hsp
score          :  Score = 27.2 bits (53), Expect = 7.7
identities     :  Identities = 9/21 (42%), Positives = 13/21 (61%)
frame          :  Frame = -1 / -1
noevent        : 
noevent        : 
query          : Query: 339  CCIFFLPGFGVPRLFVHQNNG 277
align          :             C IF++P F    LF+H+  G
sbjct          : Sbjct: 1396 CFIFYVPDFPWSNLFLHRGRG 1334
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|4493143|gb|G46852.1|G46852 Z14841_1 Zebrafish AB Danio reri
title          :            genomic clone Z14841 5', sequence tagged site
length         :            Length = 291
noevent        : 
*************** start_hsp
score          :  Score = 27.2 bits (53), Expect = 7.7
identities     :  Identities = 8/20 (40%), Positives = 13/20 (65%)
frame          :  Frame = -3 / +1
noevent        : 
noevent        : 
query          : Query: 388 NQLWKSILGLXECXFIMLYI 329
align          :            NQ+WK  L +  C F+ +Y+
sbjct          : Sbjct: 37  NQMWKHSLEVCMCVFVYIYV 96
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|4492122|gb|G45831.1|G45831 Z4588_1 Zebrafish AB Danio rerio
title          :            genomic clone Z4588 5', sequence tagged site
length         :            Length = 398
noevent        : 
*************** start_hsp
score          :  Score = 27.2 bits (53), Expect = 7.7
identities     :  Identities = 7/22 (31%), Positives = 13/22 (58%)
frame          :  Frame = +1 / +1
noevent        : 
noevent        : 
query          : Query: 205 CFLCNLFYRIFSAASDHCSIFS 270
align          :            CF   + +R+F+    HC+ F+
sbjct          : Sbjct: 13  CFALTVIWRVFAGCRPHCATFT 78
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_alignment
title          : >gi|6121804|gb|G56635.1|G56635 SHGC-102032 Human Homo sapiens S
title          :            genomic, sequence tagged site
length         :            Length = 541
noevent        : 
*************** start_hsp
score          :  Score = 27.2 bits (53), Expect = 7.7
identities     :  Identities = 9/20 (45%), Positives = 13/20 (65%)
frame          :  Frame = -1 / +2
noevent        : 
noevent        : 
query          : Query: 174 VKGFCISAFSPSQGQFRGCG 115
align          :            V GFC+++FSP +    G G
sbjct          : Sbjct: 125 VDGFCVTSFSPKKDTHPGSG 184
noevent        : 
noevent        : 
*************** end_hsp
*************** end_alignment
*************** start_database_report
database       :   Database: data/sts
posted_date    :     Posted date:  Nov 26, 1999  5:52 PM
num_letters_in_:   Number of letters in database: 31,998,854
num_sequences_i:   Number of sequences in database:  87,792
noevent        : 
noevent        : Lambda     K      H
ka_params      :    0.318    0.135    0.401
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: BLOSUM62
num_hits       : Number of Hits to DB: 40473548
num_sequences  : Number of Sequences: 87792
num_extends    : Number of extensions: 487631
num_good_extend: Number of successful extensions: 13175
num_seqs_better: Number of sequences better than 10.0: 38
query_length   : length of query: 205
database_length: length of database: 10,666,284
effective_hsp_l: effective HSP length: 46
effective_query: effective length of query: 158
effective_datab: effective length of database: 6,627,852
effective_searc: effective search space: 1047200616
effective_searc: effective search space used: 1047200616
frameshift     : frameshift window, decay const: 50,  0.1
threshold      : T: 13
window_size    : A: 40
dropoff_1st_pas: X1: 16 ( 7.3 bits)
gap_x_dropoff  : X2: 0 ( 0.0 bits)
gap_trigger    : S1: 41 (21.7 bits)
blast_cutoff   : S2: 52 (26.7 bits)
*************** end_parameters
************************************************** TESTING bt042
*************** start_header
version        : BLASTP 2.0.11 [Jan-20-2000]
noevent        : 
noevent        : 
reference      : Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
reference      : Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1
reference      : "Gapped BLAST and PSI-BLAST: a new generation of protein databa
reference      : programs",  Nucleic Acids Res. 25:3389-3402.
noevent        : 
query_info     : Query= gi|400206|sp|Q02112|LYTA_BACSU MEMBRANE-BOUND PROTEIN LY
query_info     : PRECURSOR
query_info     :          (102 letters)
noevent        : 
database_info  : Database: data/pdbaa
database_info  :            6999 sequences; 1,461,753 total letters
noevent        : 
*************** end_header
*************** start_descriptions
noevent        : Searching..................................................done
noevent        : 
no_hits        :  ***** No hits found ******
noevent        : 
*************** end_descriptions
*************** start_database_report
database       :   Database: data/pdbaa
posted_date    :     Posted date:  Feb 11, 2000  2:32 PM
num_letters_in_:   Number of letters in database: 1,461,753
num_sequences_i:   Number of sequences in database:  6999
noevent        : 
noevent        : Lambda     K      H
ka_params      :    0.302    0.126    0.332
noevent        : 
gapped         : Gapped
noevent        : Lambda     K      H
ka_params_gap  :    0.270   0.0470    0.230
noevent        : 
noevent        : 
*************** end_database_report
*************** start_parameters
matrix         : Matrix: BLOSUM62
gap_penalties  : Gap Penalties: Existence: 11, Extension: 1
num_hits       : Number of Hits to DB: 270485
num_sequences  : Number of Sequences: 6999
num_extends    : Number of extensions: 9861
num_good_extend: Number of successful extensions: 7
num_seqs_better: Number of sequences better than 10.0: 0
hsps_no_gap    : Number of HSP's better than 10.0 without gapping: 0
hsps_prelim_gap: Number of HSP's successfully gapped in prelim test: 0
hsps_prelim_gap: Number of HSP's that attempted gapping in prelim test: 7
hsps_gapped    : Number of HSP's gapped (non-prelim): 0
query_length   : length of query: 102
database_length: length of database: 1,461,753
effective_hsp_l: effective HSP length: 47
effective_query: effective length of query: 55
effective_datab: effective length of database: 1,132,800
effective_searc: effective search space: 62304000
effective_searc: effective search space used: 62304000
threshold      : T: 11
window_size    : A: 40
dropoff_1st_pas: X1: 17 ( 7.4 bits)
gap_x_dropoff  : X2: 38 (14.8 bits)
gap_x_dropoff_f: X3: 64 (24.9 bits)
gap_trigger    : S1: 43 (21.7 bits)
blast_cutoff   : S2: 47 (22.7 bits)
*************** end_parameters
Running tests on BlastParser
************************************************** TESTING bt001
************************************************** TESTING bt002
************************************************** TESTING bt003
************************************************** TESTING bt004
************************************************** TESTING bt005
************************************************** TESTING bt006
************************************************** TESTING bt007
************************************************** TESTING bt009
************************************************** TESTING bt010
************************************************** TESTING bt011
************************************************** TESTING bt012
************************************************** TESTING bt013
************************************************** TESTING bt014
************************************************** TESTING bt015
************************************************** TESTING bt016
************************************************** TESTING bt017
************************************************** TESTING bt018
************************************************** TESTING bt039
************************************************** TESTING bt040
************************************************** TESTING bt041
************************************************** TESTING bt042
************************************************** TESTING bt043
************************************************** TESTING bt044
************************************************** TESTING bt045
************************************************** TESTING bt046
************************************************** TESTING bt047
************************************************** TESTING bt048
************************************************** TESTING bt049
************************************************** TESTING bt050
************************************************** TESTING bt051
************************************************** TESTING bt052
************************************************** TESTING bt053
************************************************** TESTING bt054
************************************************** TESTING bt055
************************************************** TESTING bt056
************************************************** TESTING bt057
************************************************** TESTING bt058
************************************************** TESTING bt059
************************************************** TESTING bt060
************************************************** TESTING bt062
************************************************** TESTING bt063
************************************************** TESTING bt067
************************************************** TESTING bt071
Running tests on Blast Records
	Testing conversion of multiple alignments
