EMBOSS

| NUCLEIC GENE FINDING

Predictions of genes and other genomic features

Program name | Description
--- | ---
getorf | Finds and extracts open reading frames (ORFs)
marscan | Finds MAR/SAR sites in nucleic sequences
plotorf | Plot potential open reading frames
showorf | Pretty output of DNA translations
sixpack | Display a DNA sequence with 6-frame translation and ORFs
syco | Synonymous codon usage Gribskov statistic plot
tcode | Fickett TESTCODE statistic to identify protein-coding DNA
wobble | Wobble base plot