FingerprintUtil.h File Reference

#include <RDGeneral/export.h>
#include <GraphMol/RDKitBase.h>
#include <DataStructs/SparseIntVect.h>
#include <DataStructs/BitVects.h>
#include <cstdint>
#include <tuple>
#include <vector>
#include <map>
#include <DataStructs/ExplicitBitVect.h>
#include <boost/dynamic_bitset.hpp>
#include <GraphMol/Subgraphs/Subgraphs.h>

Go to the source code of this file.

Classes
class	RDKit::MorganFingerprints::ss_matcher

Namespaces
namespace	RDKit
	Std stuff.
namespace	RDKit::AtomPairs
namespace	RDKit::MorganFingerprints
namespace	RDKit::RDKitFPUtils

Typedefs
typedef std::tuple< boost::dynamic_bitset<>, uint32_t, unsigned int >	RDKit::MorganFingerprints::AccumTuple

Functions
RDKIT_FINGERPRINTS_EXPORT std::uint32_t	RDKit::AtomPairs::getAtomCode (const Atom *atom, unsigned int branchSubtract=0, bool includeChirality=false)
RDKIT_FINGERPRINTS_EXPORT std::uint32_t	RDKit::AtomPairs::getAtomPairCode (std::uint32_t codeI, std::uint32_t codeJ, unsigned int dist, bool includeChirality=false)
RDKIT_FINGERPRINTS_EXPORT std::uint64_t	RDKit::AtomPairs::getTopologicalTorsionCode (const std::vector< std::uint32_t > &atomCodes, bool includeChirality=false)
RDKIT_FINGERPRINTS_EXPORT std::uint32_t	RDKit::AtomPairs::getTopologicalTorsionHash (const std::vector< std::uint32_t > &pathCodes)
RDKIT_FINGERPRINTS_EXPORT void	RDKit::MorganFingerprints::getConnectivityInvariants (const ROMol &mol, std::vector< std::uint32_t > &invars, bool includeRingMembership=true)
	returns the connectivity invariants for a molecule
RDKIT_FINGERPRINTS_EXPORT void	RDKit::MorganFingerprints::getFeatureInvariants (const ROMol &mol, std::vector< std::uint32_t > &invars, const std::vector< const ROMol * > *patterns=nullptr)
	returns the feature invariants for a molecule
RDKIT_FINGERPRINTS_EXPORT void	RDKit::RDKitFPUtils::buildDefaultRDKitFingerprintAtomInvariants (const ROMol &mol, std::vector< std::uint32_t > &lAtomInvariants)
RDKIT_FINGERPRINTS_EXPORT void	RDKit::RDKitFPUtils::enumerateAllPaths (const ROMol &mol, std::map< int, std::list< std::vector< int > > > &allPaths, const std::vector< std::uint32_t > *fromAtoms, bool branchedPaths, bool useHs, unsigned int minPath, unsigned int maxPath, boost::dynamic_bitset<> *ignoreAtoms=nullptr)
RDKIT_FINGERPRINTS_EXPORT void	RDKit::RDKitFPUtils::identifyQueryBonds (const ROMol &mol, std::vector< const Bond * > &bondCache, std::vector< short > &isQueryBond)
RDKIT_FINGERPRINTS_EXPORT std::vector< unsigned int >	RDKit::RDKitFPUtils::generateBondHashes (const ROMol &mol, boost::dynamic_bitset<> &atomsInPath, const std::vector< const Bond * > &bondCache, const std::vector< short > &isQueryBond, const std::vector< int > &path, bool useBondOrder, const std::vector< std::uint32_t > *atomInvariants)

Variables
const unsigned int	RDKit::AtomPairs::numTypeBits = 4
const unsigned int	RDKit::AtomPairs::atomNumberTypes [1<< numTypeBits]
const unsigned int	RDKit::AtomPairs::numPiBits = 2
const unsigned int	RDKit::AtomPairs::maxNumPi = (1 << numPiBits) - 1
const unsigned int	RDKit::AtomPairs::numBranchBits = 3
const unsigned int	RDKit::AtomPairs::maxNumBranches = (1 << numBranchBits) - 1
const unsigned int	RDKit::AtomPairs::numChiralBits = 2
const unsigned int	RDKit::AtomPairs::codeSize = numTypeBits + numPiBits + numBranchBits
const unsigned int	RDKit::AtomPairs::numPathBits = 5
const unsigned int	RDKit::AtomPairs::maxPathLen = (1 << numPathBits) - 1
const unsigned int	RDKit::AtomPairs::numAtomPairFingerprintBits
RDKIT_FINGERPRINTS_EXPORT std::vector< std::string >	RDKit::MorganFingerprints::defaultFeatureSmarts
const std::string	RDKit::MorganFingerprints::morganConnectivityInvariantVersion = "1.0.0"
const std::string	RDKit::MorganFingerprints::morganFeatureInvariantVersion = "0.1.0"