RDKit
Open-source cheminformatics and machine learning.
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~
- i -
i :
RDKit::RDTypeTag::detail::Value
id :
RDKit::MarvinAtom
,
RDKit::MarvinBond
,
RDKit::MarvinCondition
,
RDKit::MarvinMolBase
,
RDKit::MarvinPlus
,
RDKit::SubstanceGroup::AttachPoint
idx :
DistGeom::FourthDimContribsParams
,
ForceFields::CrystalFF::ExpTorsionAngle
,
ForceFields::CrystalFF::GaussianExpTorsionAngle
,
RDKit::Descriptors::CrippenParams
idx1 :
DistGeom::ChiralViolationContribsParams
,
DistGeom::DistViolationContribsParams
,
ForceFields::AngleConstraintContribsParams
,
ForceFields::CrystalFF::GaussianTorsionAngleContribsParams
,
ForceFields::CrystalFF::PlanarityContribsParams
,
ForceFields::CrystalFF::TorsionAngleContribsParams
,
ForceFields::DistanceConstraintContribsParams
,
ForceFields::UFF::InversionContribsParams
idx2 :
DistGeom::ChiralViolationContribsParams
,
DistGeom::DistViolationContribsParams
,
ForceFields::AngleConstraintContribsParams
,
ForceFields::CrystalFF::GaussianTorsionAngleContribsParams
,
ForceFields::CrystalFF::PlanarityContribsParams
,
ForceFields::CrystalFF::TorsionAngleContribsParams
,
ForceFields::DistanceConstraintContribsParams
,
ForceFields::UFF::InversionContribsParams
idx3 :
DistGeom::ChiralViolationContribsParams
,
ForceFields::AngleConstraintContribsParams
,
ForceFields::CrystalFF::GaussianTorsionAngleContribsParams
,
ForceFields::CrystalFF::PlanarityContribsParams
,
ForceFields::CrystalFF::TorsionAngleContribsParams
,
ForceFields::UFF::InversionContribsParams
idx4 :
DistGeom::ChiralViolationContribsParams
,
ForceFields::CrystalFF::GaussianTorsionAngleContribsParams
,
ForceFields::CrystalFF::PlanarityContribsParams
,
ForceFields::CrystalFF::TorsionAngleContribsParams
,
ForceFields::UFF::InversionContribsParams
ignoreAtomAromaticity :
RDKit::RascalMCES::RascalOptions
ignoreAtomMapNumbers :
RDKit::SmilesWriteParams
ignoreAtoms :
RDKit::FingerprintFuncArguments
ignoreBondOrders :
RDKit::RascalMCES::RascalOptions
ignoreHs :
RDKit::MolAlign::BestAlignmentParams
ignoreSmoothingFailures :
RDKit::DGeomHelpers::EmbedParameters
IMPL_HYDROGEN :
RDKit::CIPLabeler::Node
ImplicitFeature() :
RDFeatures::ImplicitFeature< FAMILYMARKER, TYPEMARKER, LOCTYPE >
improperAtoms :
ForceFields::CrystalFF::CrystalFFDetails
includeAgents :
RDKit::ReactionFingerprintParams
includeAnnotations_ :
RDKit::MolDraw2D_detail::DrawMol
includeAtomTags :
RDKit::MolDrawOptions
includeChiralFlagLabel :
RDKit::MolDrawOptions
includeDativeBonds :
RDKit::SmilesWriteParams
includeDummies :
RDKit::GaussianShape::ShapeInputOptions
includeGenericBondScaffolds :
RDKit::ScaffoldNetwork::ScaffoldNetworkParams
includeGenericScaffolds :
RDKit::ScaffoldNetwork::ScaffoldNetworkParams
includeLeavingGroups :
RDKit::v2::FileParsers::MolFromSCSRParams
includeLigand :
RDKit::Descriptors::DoubleCubicLatticeVolume
includeMetadata :
RDKit::MolDrawOptions
includeMol :
RDKit::PNGMetadataParams
includeNames :
RDKit::ScaffoldNetwork::ScaffoldNetworkParams
includePkl :
RDKit::PNGMetadataParams
includeRadicals :
RDKit::MolDrawOptions
includesAtom() :
RDKit::SubstanceGroup
includesBond() :
RDKit::SubstanceGroup
includeScaffoldsWithAttachments :
RDKit::ScaffoldNetwork::ScaffoldNetworkParams
includeScaffoldsWithoutAttachments :
RDKit::ScaffoldNetwork::ScaffoldNetworkParams
includeSmiles :
RDKit::PNGMetadataParams
includeStereo :
RDKit::MolWriterParams
,
RDKit::MrvWriterParams
includesXBonds :
RDKit::Abbreviations::AbbreviationDefinition
includeTargetMolInResults :
RDKit::RGroupDecompositionParameters
increment() :
RDKit::CartesianProduct
,
RDKit::ProgressBar
index() :
IndexErrorException
,
RDKit::Canon::canon_atom
IndexErrorException() :
IndexErrorException
IndividualBondExcluded :
RDKit::FMCS::ExecStatistics
info() :
RDKit::RGroupDecompositionChromosome
InfoBitRanker() :
RDInfoTheory::InfoBitRanker
infoString() :
RDKit::AtomEnvironmentGenerator< OutputType >
,
RDKit::AtomInvariantsGenerator
,
RDKit::AtomPair::AtomPairArguments
,
RDKit::AtomPair::AtomPairAtomInvGenerator
,
RDKit::AtomPair::AtomPairEnvGenerator< OutputType >
,
RDKit::BondInvariantsGenerator
,
RDKit::FingerprintArguments
,
RDKit::FingerprintGenerator< OutputType >
,
RDKit::MorganFingerprint::MorganArguments
,
RDKit::MorganFingerprint::MorganAtomInvGenerator
,
RDKit::MorganFingerprint::MorganBondInvGenerator
,
RDKit::MorganFingerprint::MorganEnvGenerator< OutputType >
,
RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator
,
RDKit::RDKitFP::RDKitFPArguments
,
RDKit::RDKitFP::RDKitFPAtomInvGenerator
,
RDKit::RDKitFP::RDKitFPEnvGenerator< OutputType >
,
RDKit::TopologicalTorsion::TopologicalTorsionArguments
,
RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator< OutputType >
InfoType :
RDInfoTheory::InfoBitRanker
init() :
RDKit::FMCS::TargetMatch
,
RDKit::FPBReader
,
RDKit::MultiFPBReader
,
RDKit::RCore
,
RDKit::v1::MolSupplier
,
RDKit::v2::FileParsers::ForwardSDMolSupplier
,
RDKit::v2::FileParsers::MolSupplier
,
RDKit::v2::FileParsers::SDMolSupplier
,
RDKit::v2::FileParsers::SmilesMolSupplier
,
RDKit::v2::FileParsers::TDTMolSupplier
initAtom() :
RDKit::Atom
initBond() :
RDKit::Bond
initDistanceMatrix() :
ForceFields::ForceField
initDrawMolecule() :
RDKit::MolDraw2D_detail::DrawMol
initFromBinary() :
RDKit::ExtendedQueryMol
,
RDKit::GeneralizedSubstruct::ExtendedQueryMol
initFromJSON() :
RDKit::ExtendedQueryMol
,
RDKit::GeneralizedSubstruct::ExtendedQueryMol
initFromMol() :
RDKit::MolEnumerator::LinkNodeOp
,
RDKit::MolEnumerator::MolEnumeratorOp
,
RDKit::MolEnumerator::PositionVariationOp
,
RDKit::MolEnumerator::RepeatUnitOp
initFromOther() :
RDKit::Atom
,
RDKit::ExtendedQueryMol
,
RDKit::GeneralizedSubstruct::ExtendedQueryMol
initFromStream() :
RDCatalog::CatalogEntry
,
RDCatalog::CatalogParams
,
RDCatalog::HierarchCatalog< entryType, paramType, orderType >
,
RDKit::EnumerateLibrary
,
RDKit::EnumerateLibraryBase
,
RDKit::FilterCatalogEntry
,
RDKit::FilterCatalogParams
,
RDKit::FragCatalogEntry
,
RDKit::FragCatParams
,
RDKit::MolBundle
,
RDKit::MolCatalogEntry
,
RDKit::MolCatalogParams
,
RDKit::MolStandardize::AcidBaseCatalogEntry
,
RDKit::MolStandardize::AcidBaseCatalogParams
,
RDKit::MolStandardize::FragmentCatalogEntry
,
RDKit::MolStandardize::FragmentCatalogParams
,
RDKit::MolStandardize::TautomerCatalogEntry
,
RDKit::MolStandardize::TautomerCatalogParams
,
RDKit::MolStandardize::TransformCatalogEntry
,
RDKit::MolStandardize::TransformCatalogParams
,
RDKit::SubstructLibrary
,
RDKit::TautomerQuery
initFromString() :
ChemicalFeatures::FreeChemicalFeature
,
RDCatalog::CatalogEntry
,
RDCatalog::CatalogParams
,
RDCatalog::HierarchCatalog< entryType, paramType, orderType >
,
RDKit::EnumerateLibraryBase
,
RDKit::FilterCatalogEntry
,
RDKit::FilterCatalogParams
,
RDKit::FragCatalogEntry
,
RDKit::FragCatParams
,
RDKit::MolBundle
,
RDKit::MolCatalogEntry
,
RDKit::MolCatalogParams
,
RDKit::MolStandardize::AcidBaseCatalogEntry
,
RDKit::MolStandardize::AcidBaseCatalogParams
,
RDKit::MolStandardize::FragmentCatalogEntry
,
RDKit::MolStandardize::FragmentCatalogParams
,
RDKit::MolStandardize::TautomerCatalogEntry
,
RDKit::MolStandardize::TautomerCatalogParams
,
RDKit::MolStandardize::TransformCatalogEntry
,
RDKit::MolStandardize::TransformCatalogParams
,
RDKit::SubstructLibrary
,
RDKit::TautomerQuery
initFromText() :
BitVect
initGenerator() :
RDInfoTheory::BitCorrMatGenerator
initialEmbeddingMode :
RDKit::DGeomHelpers::EmbedParameters
initialize() :
ForceFields::ForceField
,
RDKit::CartesianProductStrategy
,
RDKit::EnumerationStrategyBase
,
RDKit::EvenSamplePairsStrategy
,
RDKit::RandomSampleAllBBsStrategy
,
RDKit::RandomSampleStrategy
,
RDKit::RingInfo
initializeSearchOrders() :
RDKit::SynthonSpaceSearch::SynthonSet
initializeStrategy() :
RDKit::CartesianProductStrategy
,
RDKit::EnumerationStrategyBase
,
RDKit::EvenSamplePairsStrategy
,
RDKit::RandomSampleAllBBsStrategy
,
RDKit::RandomSampleStrategy
initializeTransforms() :
RDKit::MolStandardize::TransformCatalogParams
InitialSeed :
RDKit::FMCS::ExecStatistics
,
RDKit::MCSParameters
initReactantMatchers() :
RDKit::ChemicalReaction
inputMolData :
RDKit::MolStandardize::PipelineResult
insert() :
DistGeom::TorsionValues
,
Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
RDKit::Dict
insertMol() :
RDKit::RWMol
insertQ() :
DistGeom::TorsionValues
insertSnapshot() :
RDKit::Trajectory
int_type :
boost_adaptbx::python::streambuf
INT_VECT :
RDKit::RingInfo
interimFile :
RDKit::SynthonSpaceSearch::ShapeBuildParams
interimWrites :
RDKit::SynthonSpaceSearch::ShapeBuildParams
internal :
DistGeom::ZMatrix::ZMatrixRow
InternalCoordinates() :
RDKit::DGeomHelpers::InternalCoordinates
internalCoords :
ForceFields::CrystalFF::CrystalFFDetails
internalInitialize() :
RDKit::EnumerationStrategyBase
INVALID_TAG :
RDKit::MolPickler
Invariant() :
Invar::Invariant
InversionContrib() :
ForceFields::UFF::InversionContrib
InversionContribs() :
ForceFields::UFF::InversionContribs
InversionContribsParams() :
ForceFields::UFF::InversionContribsParams
invertChirality() :
RDKit::Atom
,
RDKit::Bond
invertTorsionDependence() :
DistGeom::ZMatrix
IONIC :
RDKit::Bond
Is2DValidation() :
RDKit::MolStandardize::Is2DValidation
is2DZeroThreshold :
RDKit::MolStandardize::PipelineOptions
is2Power() :
RDKit::FMCS::Composition2N
is3D() :
RDKit::Conformer
is_hydrogen :
RDKit::RGroupData
is_linker :
RDKit::RGroupData
isAtomInRingOfSize() :
RDKit::RingInfo
isAveraged() :
RDKit::CIPLabeler::FractionalAtomicNum
isBeg() :
RDKit::CIPLabeler::Edge
isBondInRingOfSize() :
RDKit::RingInfo
isCBoundToO :
ForceFields::UFF::InversionContribsParams
IsClass :
type_caster< boost::shared_ptr< T > >
isCompleted() :
RDKit::MCSResult
isCoreAtomUserLabelled() :
RDKit::RCore
isDone() :
RDDepict::EmbeddedFrag
isDuplicate() :
RDKit::CIPLabeler::Node
isDuplicateOrH() :
RDKit::CIPLabeler::Node
isDuplicateOrHydrogenEdge() :
RDKit::CIPLabeler::Configuration
isElement() :
RDKit::MarvinAtom
isEmpty() :
RDKit::RascalMCES::PartitionSet
isEnd() :
RDKit::CIPLabeler::Edge
isEqual() :
RDKit::MarvinBond
isExpanded() :
RDKit::CIPLabeler::Node
,
RDKit::MarvinMultipleSgroup
isFindFastOrBetter() :
RDKit::RingInfo
isForced :
RDKit::DGeomHelpers::TorsionValue
isInitialized() :
RDKit::ChemicalReaction
,
RDKit::RingInfo
isInRing() :
RDKit::CIPLabeler::CIPMol
isInternalEdge() :
RDKit::CIPLabeler::Configuration
isMMFFAromatic() :
ForceFields::MMFF::MMFFAromCollection
isMolHydrogen() :
RDKit::RGroupData
isOk() :
RDKit::RGroupDecompositionChromosome
isotope :
RDKit::MarvinAtom
isotopeLabels :
RDKit::MolDrawOptions
IsotopeValidation() :
RDKit::MolStandardize::IsotopeValidation
isoVal :
conrec::ConrecSegment
isovalScaleForQuantization :
RDKit::MolDraw2DUtils::ContourParams
isPassiveRoleForContraction() :
RDKit::MarvinMol
,
RDKit::MarvinMolBase
,
RDKit::MarvinMultipleSgroup
,
RDKit::MarvinSuperatomSgroupExpanded
isPassiveRoleForExpansion() :
RDKit::MarvinMolBase
,
RDKit::MarvinMultipleSgroup
,
RDKit::MarvinSuperatomSgroup
isPointInside() :
RDKit::MolDraw2D_detail::StringRect
isProtein :
RDKit::Descriptors::DoubleCubicLatticeVolume
isPseudoAsymetric() :
RDKit::CIPLabeler::Priority
isReactionMol_ :
RDKit::MolDraw2D_detail::DrawMol
isRingFused() :
RDKit::RingInfo
isRingStereoAtom :
RDKit::Canon::canon_atom
isSet() :
RDKit::CIPLabeler::Node
,
RDKit::FMCS::Composition2N
isSgroupInSetOfAtoms() :
RDKit::MarvinMolBase
,
RDKit::MarvinSuperatomSgroup
isSssrOrBetter() :
RDKit::RingInfo
isSubstructOf() :
RDKit::TautomerQuery
isSymmSssr() :
RDKit::RingInfo
isTerminal() :
RDKit::CIPLabeler::Node
isTerminalRGroupWithUserLabel() :
RDKit::RCore
istream() :
boost_adaptbx::python::streambuf::istream
isUnique() :
RDKit::CIPLabeler::Priority
isUserDefined() :
RDKit::UsedLabelMap
isValid() :
RDKit::Deprotect::DeprotectData
,
RDKit::ExclusionList
,
RDKit::FilterCatalogEntry
,
RDKit::FilterHierarchyMatcher
,
RDKit::FilterMatcherBase
,
RDKit::FilterMatchOps::And
,
RDKit::FilterMatchOps::Not
,
RDKit::FilterMatchOps::Or
,
RDKit::MMFF::MMFFMolProperties
,
RDKit::SmartsMatcher
isVisited() :
RDKit::CIPLabeler::Node
Iterator() :
DistGeom::ZMatrix::Iterator
iterator :
better_enums::_iterable< Element >
,
DistGeom::TorsionValues
,
DistGeom::ZMatrix
,
RDKit::FMCS::SeedSet
,
RDKit::v2::FileParsers::ForwardSDMolSupplier
,
RDKit::v2::FileParsers::SDMolSupplier
,
RDKit::v2::FileParsers::SmilesMolSupplier
,
RDKit::v2::FileParsers::TDTMolSupplier
iterator_category :
DistGeom::ZMatrix::Iterator
,
RDKit::CXXAtomIterator< Graph, Vertex, Iterator, CheckedAtoms, CheckedBonds >::CXXAtomIter
,
RDKit::CXXBondIterator< Graph, Edge, Iterator, Checked >::CXXBondIter
,
RDKit::MolStandardize::TautomerEnumeratorResult::const_iterator
,
RDKit::v2::FileParsers::ForwardSupplierIter< Supplier >
,
RDKit::v2::FileParsers::RandomAccessSupplierIter< Supplier >
iterator_concept :
DistGeom::ZMatrix::Iterator
Generated on
for RDKit by
1.17.0